Files in kevin-allen/relectro
Analysis of electrophysiological data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/CellGroup.R
R/Clustering.R
R/DatFiles.R
R/ElectroProject.R
R/HeadDirection.R
R/JoinIntervals.R
R/KiloSort.R
R/Math.R
R/PlotsGeneric.R
R/PlotsSpatial.R
R/Positrack.R
R/RecSession.R
R/SignalProcessing.R
R/SpatialProperties1d.R
R/SpatialProperties2d.R
R/SpikeExtraction.R
R/SpikeTrain.R
R/SpikeWaveform.R
R/Ttl.R
R/databaseDirectories.R
R/relectro.R
R/whdFromPositrack.R
README.md
cleanup
configure
configure.ac
figures/figure_example.png
man/CellGroup-class.Rd
man/DatFiles-class.Rd
man/ElectroProject-class.Rd
man/HeadDirection-class.Rd
man/Positrack-class.Rd
man/RecSession-class.Rd
man/SpatialProperties1d-class.Rd
man/SpatialProperties2d-class.Rd
man/SpikeTrain-class.Rd
man/SpikeWaveform-class.Rd
man/animalNameFromSessionName.Rd
man/autocorrelationDoughnut-methods.Rd
man/autocorrelationDoughnutRotate-methods.Rd
man/autocorrelationNoFields-methods.Rd
man/bandPassFilter.Rd
man/borderDetection-methods.Rd
man/borderScore-methods.Rd
man/boxplotTwoFactors.Rd
man/brainRegionFromCluNo-methods.Rd
man/centerOfMass.Rd
man/checkIntegrityPositrackData.Rd
man/checkIntegrityUp.Rd
man/cluNoFromCluId.Rd
man/clusterIsolationCheck.Rd
man/colorScalePlot.Rd
man/containsElectrodeLocation-methods.Rd
man/containsEnvironment-methods.Rd
man/containsStimulation-methods.Rd
man/copyDatabase-methods.Rd
man/copyRecSessionFiles-methods.Rd
man/cor.diff.Rd
man/createSpkFile.Rd
man/crossRefractoryRatio-methods.Rd
man/datFilesGetChannels-methods.Rd
man/datFilesGetOneChannel-methods.Rd
man/datFilesSamples-methods.Rd
man/datFilesSet-methods.Rd
man/deleteCluster.Rd
man/detectDowns.Rd
man/detectFiringFields-methods.Rd
man/detectSpikesFromTrace.Rd
man/detectSpikesTetrodes.Rd
man/detectUps.Rd
man/directionFilter-methods.Rd
man/fileExists-methods.Rd
man/firingRateHisto-methods.Rd
man/firingRateMap2d-methods.Rd
man/firingRateMapAutoPlot.Rd
man/firingRateMapAutosPlot.Rd
man/firingRateMapCenterOfMass-methods.Rd
man/firingRateMapCorrelation-methods.Rd
man/firingRateMapCorrelationRotation-methods.Rd
man/firingRateMapPlot.Rd
man/firingRateMapsPlot.Rd
man/firingRateMapsRotation-methods.Rd
man/getClusteredSessionList-methods.Rd
man/getHistoStats-methods.Rd
man/getHistoStatsShuffle-methods.Rd
man/getIntervalsAtDirection-methods.Rd
man/getIntervalsAtHeadDirection-methods.Rd
man/getIntervalsAtSpeed-methods.Rd
man/getIntervalsEnvironment-methods.Rd
man/getIntervalsStimulation-methods.Rd
man/getIsClustered-methods.Rd
man/getIsEarlyProcessed-methods.Rd
man/getMapStats-methods.Rd
man/getMapStatsShuffle-methods.Rd
man/getRecSession-methods.Rd
man/getRecSessionObjects-methods.Rd
man/getSessionList-methods.Rd
man/getSessionListFromSessionNames-methods.Rd
man/getSpeedAtResValues-methods.Rd
man/getWaveformMatrix.Rd
man/gridScore-methods.Rd
man/gridSpacing-methods.Rd
man/hdHistoAsDataFrame-methods.Rd
man/headDirectionHisto-methods.Rd
man/headDirectionPolarPlot.Rd
man/headDirectionPolarPlots.Rd
man/headDirectionStats-methods.Rd
man/headDirectionStatsShuffle-methods.Rd
man/histoStatsAsDataFrame-methods.Rd
man/identifySpikeTimes.Rd
man/ifr-methods.Rd
man/ifrAssociation-methods.Rd
man/isolationDistance-methods.Rd
man/joinIntervalsAND.Rd
man/linearRatePlot.Rd
man/linearRatePlots.Rd
man/linearizeLinearTrack-methods.Rd
man/loadCellGroup-methods.Rd
man/loadPositrack-methods.Rd
man/loadRecSession-methods.Rd
man/loadSessionsInList-methods.Rd
man/loadSpikeTrain-methods.Rd
man/makePairs.Rd
man/mapSpatialAutocorrelation-methods.Rd
man/mapsAsDataFrame-methods.Rd
man/meanFiringRate-methods.Rd
man/meanWaveform-methods.Rd
man/mergeSimultaneousSpikes.Rd
man/mergeTetrodeSpecificResCluFiles.Rd
man/modeRelectro.Rd
man/pathPlot.Rd
man/percentileFiringRateMaps-methods.Rd
man/plotPoints.Rd
man/plotSimulatedRawTrace.Rd
man/plotSpikeDetectionSegment.Rd
man/powerRootMeanSquare.Rd
man/rateHistoAsDataFrame-methods.Rd
man/readFetFile.Rd
man/recordingDate-methods.Rd
man/refractoryRatio-methods.Rd
man/runOnSessionList-methods.Rd
man/sem.Rd
man/sessionNameFromCluId.Rd
man/sessionNamesFromSessionList.Rd
man/setCellList-methods.Rd
man/setEvents-methods.Rd
man/setIntervals-methods.Rd
man/setInvalidOutsideInterval-methods.Rd
man/setPositrack-methods.Rd
man/setSessionList-methods.Rd
man/setSpikeTrain-methods.Rd
man/shift.Rd
man/shiftHdRandom-methods.Rd
man/shiftLinRandom-methods.Rd
man/shiftPositionRandom-methods.Rd
man/shiftPositionVector.Rd
man/shiftPositionVectors.Rd
man/shiftSpeedRandom-methods.Rd
man/simulateRawTrace.Rd
man/smoothGaussian.Rd
man/smoothhd-methods.Rd
man/smoothxy-methods.Rd
man/sortRecSessionListChronologically.Rd
man/speedFilter-methods.Rd
man/speedRateTuningCurve-methods.Rd
man/speedScore-methods.Rd
man/speedScoreShuffle-methods.Rd
man/spikeDetectionAccuracy.Rd
man/spikeDistanceMetric-methods.Rd
man/spikeExtractionSession.Rd
man/spikeExtractionTetrodeTrialByTrial.Rd
man/spikeGeoFeatureOneSpike.Rd
man/spikeGeoFeatures.Rd
man/spikeOnPath-methods.Rd
man/spikeOnPathPlot.Rd
man/spikePCA.Rd
man/spikeTimeAutocorrelation-methods.Rd
man/spikeTimeAutocorrelationAsDataFrame-methods.Rd
man/spikeTimeAutocorrelationCenterOfMass-methods.Rd
man/spikeTimeAutocorrelationPlot.Rd
man/spikeTimeAutocorrelationsPlot.Rd
man/spikeTimeCrosscorrelation-methods.Rd
man/spikeTimeCrosscorrelationAsDataFrame-methods.Rd
man/spikeTimeCrosscorrelationEvents-methods.Rd
man/spikeTimeCrosscorrelationEventsAsDataFrame-methods.Rd
man/spikeTriggeredFiringRateMap2d-methods.Rd
man/spikeTriggeredHeadDirectionCrossHisto-methods.Rd
man/spikeTriggeredHeadDirectionHisto-methods.Rd
man/spikeWaveformFromTraces.Rd
man/statsAsDataFrame-methods.Rd
man/timeWithinIntervals.Rd
man/waveformCharacteristics-methods.Rd
man/whdAlignedTtlPositrack.Rd
man/whdFromPositrack.Rd
man/writeFetFile.Rd
man/writeMmFile.Rd
man/writeParTetrodeFile.Rd
relectro.Rproj
src/Makevars
src/Makevars.in
src/autocorrelation.c
src/convolution.c
src/crosscorrelation.c
src/dat_files.c
src/firing_rate.c
src/ifr.c
src/intervals.c
src/math.c
src/relectro.h
src/signal_processing.c
src/spatial.c
src/spike_extraction.c
src/text_files.c
src/whdFiles.c
tests/testthat.R
tests/testthat/test_DatFiles.R
tests/testthat/test_ElectroProject.R
tests/testthat/test_HeadDirection.R
tests/testthat/test_JoinIntervals.R
tests/testthat/test_Math.R
tests/testthat/test_Positrack.R
tests/testthat/test_RecSession.R
tests/testthat/test_SpatialPlots.R
tests/testthat/test_SpatialProperties2d.R
tests/testthat/test_SpikeExtraction.R
tests/testthat/test_SpikeTrain.R
tools/aclocal.m4
tools/compile
tools/install-sh
tools/missing
