SpatialProperties1d-class: A S4 class to analyze spatial properties in a 1D environment

Description Slots

Description

Use to get firing rate histogram of 1D environment (e.g. linear track). You can get information scores, sparsity, etc.

Slots

session

Name of the recording session

cmPerBin

Number of cm in each bin of a linear firing rate map, 2 by default

smoothOccupancySd

Standard deviation in cm of the gaussian kernel used to smooth the occupancy map, 3 by default

smoothRateHistoSd

Standard deviation in cm of the gaussian kernel used to smooth the firing rate histograms, 3 by default

nBinRateHisto

Number of bins in the firing rate histograms, set according to the max position value.

xSpikes

Position of the animal at each spike time

rateHisto

Firing rate histogram of all neurons, stored in an array

occupancy

Occupancy histogram

cellList

Cell list to analyze

reduceSize

Logical, if set to TRUE, position data will be shifted so that the minimum has a value of 0, TRUE by default

peakRate

Vector containing the peak firing rates from the firing rate histograms

infoScore

Information scores of the firing rate histograms

sparsity

Sparsity of the firing rate histograms

nShufflings

Number of shufflings to get chance levels, by default 100

minShiftMs

Minimum time shift of the position data when doing shuffling

peakRateShuffle

peak firing rate in the shuffling analysis

infoScoreShuffle

Information score from the shuffling analysis

sparsityShuffle

Sparsity from the shuffling analysis


kevin-allen/relectro documentation built on May 20, 2019, 9:06 a.m.