tof_make_knn_graph: Title

In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles

Title

Description

Title

Usage

tof_make_knn_graph(
  tof_tibble,
  knn_cols,
  num_neighbors,
  distance_function = c("euclidean", "cosine"),
  graph_type = c("weighted", "unweighted"),
  ...
)

Arguments

tof_tibble	A tibble or tof_tbl.
knn_cols	Unquoted column names indicating which columns in tof_tibble should be used for the KNN calculation.
num_neighbors	An integer number of neighbors to find for each cell ( not including itself).
distance_function	A string indicating which distance function to use for the nearest-neighbor calculation. Options include "euclidean" (the default) and "cosine" distances.
graph_type	A string indicating if the graph's edges should have weights ("weighted"; the default) or not ("unweighted").
...	Optional additional arguments to pass to tof_find_knn

Value

A tbl_graph.

Examples

NULL

keyes-timothy/tidytof documentation built on May 7, 2024, 12:33 p.m.