tof_read_csv: Read high-dimensional cytometry data from a .csv file into a...
In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles
tof_read_csv R Documentation
Read high-dimensional cytometry data from a .csv file into a tidy tibble.
Description
Read high-dimensional cytometry data from a .csv file into a tidy tibble.
Usage
tof_read_csv(file_path = NULL, panel_info = dplyr::tibble())
Arguments
file_path
A file path to a single .csv file.
panel_info
Optional. A tibble or data.frame containing information about the
panel used during high-dimensional cytometry data acquisition. Two columns are required:
"metals" and "antigens".
Value
A 'tof_tbl' in which each row represents a single cell and each
column represents a high-dimensional cytometry antigen channel.
A 'tof_tbl' is an S3 class that extends the "tibble" class by storing
one additional attribute: "panel" (a tibble storing information about the
panel used during data acquisition). Because panel information isn't
obvious from data read as a .csv file, this information must be provided
manually from the user (unlike in 'tof_read_fcs').
keyes-timothy/tidytof documentation built on Aug. 28, 2024, 8:37 a.m.
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| tof_read_csv | R Documentation |
Read high-dimensional cytometry data from a .csv file into a tidy tibble.
Description
Read high-dimensional cytometry data from a .csv file into a tidy tibble.
Usage
tof_read_csv(file_path = NULL, panel_info = dplyr::tibble())
Arguments
file_path |
A file path to a single .csv file. |
panel_info |
Optional. A tibble or data.frame containing information about the panel used during high-dimensional cytometry data acquisition. Two columns are required: "metals" and "antigens". |
Value
A 'tof_tbl' in which each row represents a single cell and each column represents a high-dimensional cytometry antigen channel.
A 'tof_tbl' is an S3 class that extends the "tibble" class by storing one additional attribute: "panel" (a tibble storing information about the panel used during data acquisition). Because panel information isn't obvious from data read as a .csv file, this information must be provided manually from the user (unlike in 'tof_read_fcs').
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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