tof_read_fcs: Read high-dimensional cytometry data from an .fcs file into a...

In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles

Read high-dimensional cytometry data from an .fcs file into a tidy tibble.

Description

This function reads high-dimensional cytometry data from a single .fcs file into a tidy data structure called a 'tof_tbl' ("tof_tibble"). tof_tibbles are identical to normal tibbles except for an additional attribute ("panel") that stores information about the high-dimensional cytometry panel used during data acquisition.

Usage

tof_read_fcs(file_path = NULL, sep = "|")

Arguments

file_path	A file path to a single .fcs file.
sep	A string to use to separate the antigen name and its associated metal in the column names of the output tibble. Defaults to "|".

Value

a 'tof_tbl' in which each row represents a single cell and each column represents a high-dimensional cytometry antigen channel.

A 'tof_tbl' is an S3 class that extends the "tibble" class by storing one additional attribute: "panel" (a tibble storing information about the panel used during data acquisition).

keyes-timothy/tidytof documentation built on Aug. 28, 2024, 8:37 a.m.