tof_set_panel: Set panel information from a tof_tibble

In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles

Set panel information from a tof_tibble

Description

Set panel information from a tof_tibble

Usage

tof_set_panel(tof_tibble, panel)

Arguments

tof_tibble	A 'tof_tbl'.
panel	A tibble containing two columns ('metals' and 'antigens') representing the information about a panel

Value

A 'tof_tibble' containing information about the CyTOF panel that was used during data acquisition for the data contained in the input 'tof_tibble'. Two columns are required: "metals" and "antigens".

See Also

Other tof_tbl utilities: new_tof_tibble(), tof_get_panel()

Examples

# get current panel from an .fcs file
input_file <- dir(tidytof_example_data("aml"), full.names = TRUE)[[1]]
tof_tibble <- tof_read_data(input_file)
current_panel <- tof_get_panel(tof_tibble)

# create a new panel (remove empty channels)
new_panel <- dplyr::filter(current_panel, antigens != "empty")
tof_set_panel(tof_tibble = tof_tibble, panel = new_panel)

keyes-timothy/tidytof documentation built on May 7, 2024, 12:33 p.m.