tof_write_data: Write high-dimensional cytometry data to a file or to a...

In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles

Write high-dimensional cytometry data to a file or to a directory of files

Description

Write data (in the form of a 'tof_tbl') into either a .csv or an .fcs file for storage.

Usage

tof_write_data(
  tof_tibble = NULL,
  group_cols,
  out_path = NULL,
  format = c("fcs", "csv"),
  sep = "_",
  file_name
)

Arguments

tof_tibble	A 'tof_tbl' or a 'tibble'.
group_cols	Optional. Unquoted names of the columns in 'tof_tibble' that should be used to group cells into separate files. Supports tidyselect helpers. Defaults to no grouping (all cells are written into a single file).
out_path	Path to the directory where output files should be saved.
format	format for the files being written. Currently supports .csv and .fcs files
sep	Delimiter that should be used between each of the values of 'group_cols' to create the output .csv/.fcs file names. Defaults to "_".
file_name	If ‘group_cols' isn’t specified, the name (without an extension) that should be used for the saved file.

Value

This function does not explicitly return any values. Instead, it writes .csv and/or .fcs files to the specified 'out_path'.

See Also

Other input/output functions: tof_read_data(), tof_write_csv(), tof_write_fcs()

Examples

NULL

keyes-timothy/tidytof documentation built on Aug. 28, 2024, 8:37 a.m.