tof_write_fcs: Write a series of .fcs files from a tof_tbl

In keyes-timothy/tidytof: Analyze High-dimensional Cytometry Data Using Tidy Data Principles

Write a series of .fcs files from a tof_tbl

Description

This function takes a given 'tof_tbl' and writes the single-cell data it contains into .fcs files within the directory located at 'out_path'. The 'group_cols' argument specifies how the rows of the 'tof_tbl' (each cell) should be broken into separate .fcs files

Usage

tof_write_fcs(tof_tibble, group_cols, out_path, sep = "_", file_name)

Arguments

tof_tibble	A 'tof_tbl' or a 'tibble'.
group_cols	Unquoted names of the columns in 'tof_tibble' that should be used to group cells into separate files. Supports tidyselect helpers. Defaults to NULL (all cells are written into a single file).
out_path	A system path indicating the directory where the output .csv files should be saved. If the directory doesn't exist, it will be created.
sep	Delimiter that should be used between each of the values of 'group_cols' to create the output .fcs file names. Defaults to "_".
file_name	If ‘group_cols' isn’t specified, the name (without an extension) that should be used for the saved .csv file.

Value

This function does not return anything. Instead, it has the side-effect of saving .fcs files to 'out_path'.

See Also

Other input/output functions: tof_read_data(), tof_write_csv(), tof_write_data()

Examples

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keyes-timothy/tidytof documentation built on Aug. 28, 2024, 8:37 a.m.