API for khabbazian/l1ou
Tools for detecting past changes in the expected mean trait values and studying trait evolution from comparative data
| Global functions | |
|---|---|
| AIC.logLik.phylolm | Source code |
| AIC.phylolm | Source code |
| add_configuration_score_to_db | Source code |
| add_configuration_score_to_list | Source code |
| adjust_data | Man page Source code |
| alpha_upper_bound | Source code |
| bootstrap_support_multivariate | Source code |
| bootstrap_support_univariate | Source code |
| cmp_AICc | Source code |
| cmp_AICc_CR | Source code |
| cmp_BIC | Source code |
| cmp_BIC_CR | Source code |
| cmp_mBIC | Source code |
| cmp_mBIC_df | Source code |
| cmp_model_score | Source code |
| cmp_model_score_CR | Source code |
| cmp_pBIC | Source code |
| cmp_pBIC_CR | Source code |
| cmp_pBICess | Source code |
| cmp_sqrt_OU_covariance | Source code |
| configuration_ic | Man page Source code |
| convert_shifts2regions | Man page Source code |
| correct_unidentifiability | Source code |
| do_backward_correction | Source code |
| effective.sample.size | Source code |
| erase_configuration_score_db | Source code |
| estimate_convergent_regimes | Man page Source code |
| estimate_convergent_regimes_surface | Source code |
| estimate_shift_configuration | Man page Source code |
| estimate_shift_configuration_known_alpha | Source code |
| estimate_shift_configuration_known_alpha_multivariate | Source code |
| extractAIC.phylolm | Source code |
| find_convergent_regimes | Source code |
| fit_OU | Man page Source code |
| fit_OU_model | Source code |
| gen_tree_array | Source code |
| generate_design_matrix | Source code |
| generate_prediction_vec | Source code |
| generate_relation | Source code |
| get_configuration_in_sol_path | Source code |
| get_configuration_score_from_list | Source code |
| get_data | Source code |
| get_num_solutions | Source code |
| get_score_of_configuration | Source code |
| get_shift_configuration | Man page Source code |
| get_stored_config_score | Source code |
| l1ou_bootstrap_support | Man page Source code |
| list_investigated_configs | Source code |
| lizard.traits | Man page |
| lizard.tree | Man page |
| lnorm | Source code |
| logLik.phylolm | Source code |
| my_phylolm_interface | Source code |
| nobs.phylolm | Source code |
| normalize_tree | Man page Source code |
| phylolm_CR | Source code |
| phylolm_interface_CR | Source code |
| plot.l1ou | Man page |
| plot.phylolm | Source code |
| predict.phylolm | Source code |
| print.l1ou | Source code |
| print.phylolm | Source code |
| print.summary.phylolm | Source code |
| print_out | Source code |
| profile.l1ou | Man page Source code |
| rescale_matrix | Source code |
| residuals.phylolm | Source code |
| select_best_solution | Source code |
| sqrt_OU_covariance | Man page Source code |
| summary.l1ou | Man page Source code |
| summary.phylolm | Source code |
| vcov.phylolm | Source code |
