API for khabbazian/l1ou
Tools for detecting past changes in the expected mean trait values and studying trait evolution from comparative data

Global functions
AIC.logLik.phylolm Source code
AIC.phylolm Source code
add_configuration_score_to_db Source code
add_configuration_score_to_list Source code
adjust_data Man page Source code
alpha_upper_bound Source code
bootstrap_support_multivariate Source code
bootstrap_support_univariate Source code
cmp_AICc Source code
cmp_AICc_CR Source code
cmp_BIC Source code
cmp_BIC_CR Source code
cmp_mBIC Source code
cmp_mBIC_df Source code
cmp_model_score Source code
cmp_model_score_CR Source code
cmp_pBIC Source code
cmp_pBIC_CR Source code
cmp_pBICess Source code
cmp_sqrt_OU_covariance Source code
configuration_ic Man page Source code
convert_shifts2regions Source code
correct_unidentifiability Source code
do_backward_correction Source code
effective.sample.size Source code
erase_configuration_score_db Source code
estimate_convergent_regimes Man page Source code
estimate_convergent_regimes_surface Source code
estimate_shift_configuration Man page Source code
estimate_shift_configuration_known_alpha Source code
estimate_shift_configuration_known_alpha_multivariate Source code
extractAIC.phylolm Source code
find_convergent_regimes Source code
fit_OU Man page Source code
fit_OU_model Source code
gen_tree_array Source code
generate_design_matrix Source code
generate_prediction_vec Source code
generate_relation Source code
get_configuration_in_sol_path Source code
get_configuration_score_from_list Source code
get_data Source code
get_num_solutions Source code
get_score_of_configuration Source code
get_shift_configuration Man page Source code
get_stored_config_score Source code
l1ou_bootstrap_support Man page Source code
list_investigated_configs Source code
lizard.traits Man page
lizard.tree Man page
lnorm Source code
logLik.phylolm Source code
my_phylolm_interface Source code
nobs.phylolm Source code
normalize_tree Man page Source code
phylolm_CR Source code
phylolm_interface_CR Source code
plot.l1ou Man page Source code
plot.phylolm Source code
predict.phylolm Source code
print.l1ou Source code
print.logLik.phylolm Source code
print.phylolm Source code
print.summary.phylolm Source code
print_out Source code
profile.l1ou Man page Source code
rescale_matrix Source code
residuals.phylolm Source code
run_grplasso Source code
select_best_solution Source code
sqrt_OU_covariance Man page Source code
summary.l1ou Man page Source code
summary.phylolm Source code
vcov.phylolm Source code
khabbazian/l1ou documentation built on July 30, 2018, 12:05 p.m.