profile.l1ou: Prints out a summary of the shift configurations investigated...

In khabbazian/l1ou: Tools for detecting past changes in the expected mean trait values and studying trait evolution from comparative data

Prints out a summary of the shift configurations investigated by estimate_shift_configuration

Description

prints the list of the shift configurations sorted by number of shifts and corresponding ic scores.

Usage

## S3 method for class 'l1ou'
profile(model, ...)

Arguments

model	object of class l1ou returned by estimate_shift_configuration.
...	further arguments.

Value

shift.configurations	list of shift configurations sorted by number of shifts.
scores	list of scores corresponding to shift.configurations.
nShifts	number of shifts corresponding to the shift configurations.

Examples

data(lizard.traits, lizard.tree)
Y <- lizard.traits[,1]
eModel <- estimate_shift_configuration(lizard.tree, Y)
model.profile  <- profile(eModel)
plot(model.profile$nShifts, model.profile$scores)

khabbazian/l1ou documentation built on Aug. 10, 2022, 7:41 p.m.