Man pages for khabbazian/l1ou
Tools for detecting past changes in the expected mean trait values and studying trait evolution from comparative data
| adjust_data | Adjusts the tree and traits to meet the requirements of... |
| configuration_ic | Computes the information criterion score for a given... |
| convert_shifts2regions | Converts shift values to optimum values on the edges. |
| estimate_convergent_regimes | Detects convergent regimes under an OU model |
| estimate_shift_configuration | Detects evolutionary shifts under an OU model |
| fit_OU | Fits an OU model based on a given configuration |
| get_shift_configuration | Returns the best shift configuration with a given number of... |
| l1ou_bootstrap_support | Computes bootstrap support for shift positions |
| lizard.traits | Morphospace of 100 Anolis lizards on Caribbean islands |
| lizard.tree | Phylogenetic tree of 100 Anolis lizards on Caribbean islands |
| normalize_tree | Normalizes branch lengths to a unit tree height |
| plot.l1ou | Visualizes a shift configuration: tree and trait(s) |
| profile.l1ou | Prints out a summary of the shift configurations investigated... |
| sqrt_OU_covariance | (inverse) square root of the phylogenetic covariance |
| summary.l1ou | Prints out a summary of the model |
