Man pages for khaled-alshamaa/QBMS
Query the Breeding Management System(s)
| brapi_get_call | Internal function used for core BrAPI GET calls |
| brapi_headers | Common HTTP headers to send |
| brapi_map | /brapi/brapi_ver/brapi_call |
| build_pedigree_table | Building Pedigree Table Recursively |
| calc_biovars | Calculate the Bioclimatic Variables |
| debug_qbms | Debug internal QBMS status object |
| get_async_page | Async version of HTTP GET request |
| get_async_pages | Run all supplied pages |
| get_germplasm_attributes | Get germplasm attributes for a given germplasm in a crop |
| get_germplasm_data | Get the observations data of a given germplasm name in a crop |
| get_germplasm_id | Get Germplasm ID |
| get_germplasm_list | Get the germplasm list of the current active study |
| get_hwsd2 | Get HWSD v2 Soil data for given location(s) |
| get_login_details | Login pop-up window |
| get_parents | Get Direct Parents |
| get_pedigree_table | Get the Pedigree Table |
| get_program_studies | Get the list of trials studies locations information of the... |
| get_program_trials | Internal function used to retrieve the rough list of trials |
| get_qbms_connection | Get the QBMS connection |
| get_study_data | Get the observations data of the current active study |
| get_study_info | Get the details/metadata of the current active study |
| get_terraclimate | Get TerraClimate data for a given coordinate(s) |
| get_trial_data | Get the observations data of the current active trial |
| get_trial_obs_ontology | Get the traits ontology/metadata of the current active trial |
| gigwa_get_metadata | Get the metadate of the current active GIGWA run |
| gigwa_get_samples | Get the samples list of the current active GIGWA run |
| gigwa_get_variants | Get variants in the selected GIGWA run |
| gigwa_list_dbs | Get the list of existing databases in the current GIGWA... |
| gigwa_list_projects | Get the list of all projects in the selected GIGWA database |
| gigwa_list_runs | Get the list of run names in the selected GIGWA project |
| gigwa_set_db | Set the current active GIGWA database by name |
| gigwa_set_project | Set the current active GIGWA project |
| gigwa_set_run | Set the current active GIGWA run |
| ini_hwsd2 | Download and setup HWSD v2.0 data files to extract their data... |
| ini_terraclimate | Download TerraClimate netCDF data files to extract their data... |
| list_crops | Get the list of supported crops |
| list_locations | Get the list of locations information of the current selected... |
| list_programs | Get the list of breeding programs names |
| list_studies | Get the list of studies in the current active trial |
| list_trials | Get the list of trials in the current active breeding program |
| login_bms | Login to the server |
| login_breedbase | Login to the BreedBase server |
| login_gigwa | Login to the GIGWA server |
| login_oauth2 | Login using OAuth 2.0 Authentication |
| qbms_globals | List of non-BrAPI calls in QBMS functions |
| rbindlistx | Makes one data.table from a list of many |
| rbindx | Combine data.frames by row, filling in missing columns |
| scan_brapi_endpoints | Scan BrAPI endpoints |
| set_crop | Set the current active crop |
| set_program | Set the current active breeding program |
| set_qbms_config | Configure BMS server settings |
| set_qbms_connection | Set the QBMS connection |
| set_study | Set the current active study by location name |
| set_token | Set Access Token Response |
| set_trial | Set the current active trial |
