get_qbms_connection: Get the QBMS connection

In khaled-alshamaa/QBMS: Query the Breeding Management System(s)

Get the QBMS connection

Description

Get the QBMS connection object from the current environment

Usage

get_qbms_connection()

Value

a list of the current connection config and status

Author(s)

Khaled Al-Shamaa, [e-mail]

See Also

set_qbms_connection

Examples

if(interactive()) {
# configure QBMS to connect the phenotypics server
set_qbms_config("https://bmsdev-brapi.ibp.services/ibpworkbench/controller/auth/login")

# login, set the crop, and program
login_bms()
set_crop("maize")
set_program("MC Maize")

# get germplasm data
df1 <- get_germplasm_data("BASFCORN-2-1")

# save current connection (phenotypic server)
con1 <- get_qbms_connection()

# configure QBMS to connect the genotypic server
set_qbms_config("https://gigwa.southgreen.fr/gigwa/", engine = "gigwa", no_auth = TRUE)

# set the db, project, and run
gigwa_set_db("3kG_10M")
gigwa_set_project("3003_ind")
gigwa_set_run("1")

# get associated metadata
df2 <- gigwa_get_metadata()

# save current connection (before switch)
con2 <- get_qbms_connection()

# load the saved phenotypic server connection
set_qbms_connection(con1)

# continue retrieving germplasm attributes from the phenotypic server
df3 <- get_germplasm_attributes("BASFCORN-2-1")
}

khaled-alshamaa/QBMS documentation built on Jan. 27, 2024, 6:40 a.m.