tests/testthat/test_ouija.R

In kieranrcampbell/ouija: Interpretable marker-based single-cell pseudotime using Bayesian parametric models

library(testthat)
library(Rcpp)
library(ouija)

context("Basic functionality")


test_that("ouija returns valid object", {

  if (TRUE) {
    data(example_gex)
    G <- 4
    N <- 50
    small_example_gex <- example_gex[seq_len(N), seq_len(G)]

    oui <- ouija(small_example_gex, iter = 500)

    expect_is(oui, "ouija_fit")
    expect_is(oui$fit, "stanfit")
    expect_equal(dim(small_example_gex), dim(oui$Y))
    expect_equal(N, length(map_pseudotime(oui)))
    expect_equal(G, length(switch_strengths(oui)))
    expect_equal(G, length(switch_times(oui)))

    reg_df <- gene_regulation(oui)
    expect_is(reg_df, "data.frame")

    cmat <- consistency_matrix(oui)
    expect_is(cmat, "matrix")
    expect_equal(dim(cmat), c(N, N))
  }
})