cran-comments.md

In kkang7/CDSeq_R_Package: A Complete Deconvolution Method using Sequencing Data

Test environments

• local OS X install, R 3.6.0
• Ubuntu 16.04.6 LTS (on travis-ci), R 4.0.2
• win-builder (devel and release)

R CMD check results

There were no ERRORs or WARNINGs.

There was 1 NOTE for win-builder:

• checking CRAN incoming feasibility ... NOTE Possibly mis-spelled words in DESCRIPTION: Deconvolution (3:19) Kang (12:152) al (12:160) et (12:157)

Deconvolution is NOT a mis-spelled word. Kang et al. is the paper that describes the method.

Downstream dependencies

There are currently no downstream dependencies for this package

Resubmission

This is a resubmission. In this version I have:

• Added citation information for the package.

• Added a few more examples in the Rd-files and enabled automatic tesing using usethis::use_testthat().

• Added option to suppress printing message to console, i.e. setting verbose = FALSE.

• Added Authors@R field.

• Reset par() option to default after plotting.

• Ensured examples do not use more than 2 cores.

Resubmission

• Added all authors, contributors and copyright holders in the Authors@R field with the appropriate roles.

Resubmission 2020-02-05

• Added verbose parameter to prevent from writing to console.

• Makoto Matsumoto and Takuji Nishimura are NOT part of the R package or method development. I used the Mersenne Twister random number generator developed by Makoto Matsumoto and Takuji Nishimura. The Mersenne Twister random number generator code is in cokus.cpp and I quote the writer of the cokus.cpp file: "This version is a recode by Shawn Cokus ([e-mail]) on March 8, 1998 of a version by Takuji Nishimura (who had suggestions from Topher Cooper and Marc Rieffel in July-August 1997)."

kkang7/CDSeq_R_Package documentation built on May 4, 2021, 8:12 p.m.