API for kkdey/aRchaic.site
Visualization, Exploration and Clustering of Ancient vs Modern BAM mutation patterns
| Global functions | |
|---|---|
| StructureGGplot | Source code |
| aRchaic_class | Source code |
| aRchaic_class_beta | Source code |
| aRchaic_cluster | Source code |
| aRchaic_cluster_beta | Source code |
| aRchaic_cluster_beta_mutation | Source code |
| aRchaic_cluster_beta_mutation_flank | Source code |
| aRchaic_cluster_beta_mutation_flank_pos | Source code |
| aRchaic_cluster_beta_mutation_pos | Source code |
| aRchaic_cluster_beta_pos | Source code |
| aRchaic_cluster_beta_wo_strand | Source code |
| aRchaic_cluster_beta_wo_strand_break | Source code |
| aRchaic_mutation_trend | Source code |
| aRchaic_pca | Source code |
| aRchaic_pca_beta | Source code |
| aRchaic_pool | Source code |
| aRchaic_tsne | Source code |
| aRchaic_tsne_beta | Source code |
| aRchaic_view | Source code |
| addLetter2 | Source code |
| aggregate_signature_counts | Man page Source code |
| club_signature_counts | Man page Source code |
| damage.ic | Source code |
| damageLogo.pos.str.skeleton | Source code |
| damageLogo.pos.str.skeleton.four | Source code |
| damageLogo.pos.str.skeleton.one | Source code |
| damageLogo.pos.str.skeleton.three | Source code |
| damageLogo.pos.str.skeleton.two | Source code |
| damageLogo_five | Man page Source code |
| damageLogo_four | Source code |
| damageLogo_one | Source code |
| damageLogo_three | Source code |
| damageLogo_two | Source code |
| damage_build_bin_counts | Source code |
| filter_by_mutation | Source code |
| filter_by_mutation_flank | Source code |
| filter_by_mutation_flank_pos | Source code |
| filter_by_mutation_pos | Source code |
| filter_by_pos | Source code |
| filter_by_pos_pattern | Source code |
| filter_out_strand | Source code |
| filter_out_strand_break | Source code |
| filter_signatures_only_location | Source code |
| flanking_base_composition | Source code |
| gsub2 | Source code |
| ic_computer_2 | Source code |
| letterA | Source code |
| letterC | Source code |
| letterG | Source code |
| letterT | Source code |
| letterX | Source code |
| letter_C_to_A | Source code |
| letter_C_to_G | Source code |
| letter_C_to_T | Source code |
| letter_T_to_A | Source code |
| letter_T_to_C | Source code |
| letter_T_to_G | Source code |
| plot_bar | Source code |
| plot_graph | Source code |
| plot_graph_2 | Source code |
| plot_logo | Source code |
| pwm2ic | Source code |
| read_length_distribution | Man page Source code |
| signatureclub2 | Source code |
| strand_breaks_composition | Source code |
