API for kkdey/aRchaic.site
Visualization, Exploration and Clustering of Ancient vs Modern BAM mutation patterns

Global functions
StructureGGplot Source code
aRchaic_class Source code
aRchaic_class_beta Source code
aRchaic_cluster Source code
aRchaic_cluster_beta Source code
aRchaic_cluster_beta_mutation Source code
aRchaic_cluster_beta_mutation_flank Source code
aRchaic_cluster_beta_mutation_flank_pos Source code
aRchaic_cluster_beta_mutation_pos Source code
aRchaic_cluster_beta_pos Source code
aRchaic_cluster_beta_wo_strand Source code
aRchaic_cluster_beta_wo_strand_break Source code
aRchaic_mutation_trend Source code
aRchaic_pca Source code
aRchaic_pca_beta Source code
aRchaic_pool Source code
aRchaic_tsne Source code
aRchaic_tsne_beta Source code
aRchaic_view Source code
addLetter2 Source code
aggregate_signature_counts Man page Source code
club_signature_counts Man page Source code
damage.ic Source code
damageLogo.pos.str.skeleton Source code
damageLogo.pos.str.skeleton.four Source code
damageLogo.pos.str.skeleton.one Source code
damageLogo.pos.str.skeleton.three Source code
damageLogo.pos.str.skeleton.two Source code
damageLogo_five Man page Source code
damageLogo_four Source code
damageLogo_one Source code
damageLogo_three Source code
damageLogo_two Source code
damage_build_bin_counts Source code
filter_by_mutation Source code
filter_by_mutation_flank Source code
filter_by_mutation_flank_pos Source code
filter_by_mutation_pos Source code
filter_by_pos Source code
filter_by_pos_pattern Source code
filter_out_strand Source code
filter_out_strand_break Source code
filter_signatures_only_location Source code
flanking_base_composition Source code
gsub2 Source code
ic_computer_2 Source code
letterA Source code
letterC Source code
letterG Source code
letterT Source code
letterX Source code
letter_C_to_A Source code
letter_C_to_G Source code
letter_C_to_T Source code
letter_T_to_A Source code
letter_T_to_C Source code
letter_T_to_G Source code
plot_bar Source code
plot_graph Source code
plot_graph_2 Source code
plot_logo Source code
pwm2ic Source code
read_length_distribution Man page Source code
signatureclub2 Source code
strand_breaks_composition Source code
theta_breakdown Source code
kkdey/aRchaic.site documentation built on Jan. 10, 2018, 6:58 a.m.