archaic_pool: Aggregating signature counts from MFF files from one or more...

Description Usage Arguments Value

View source: R/archaic_pool.R


Aggregate signature counts data using archaic_prepare() from multiple study directories into a single data frame or matrix.





may be a list of count data matrices generated by archaic_prepare() or a vector of folder names containing MFF files.


The function creates a matrix of counts with combined samples from multiple studies (stored as .csv MFF files and/or .RData file). The number of rows of this matrix is same as the number of study samples across all the studies considered, with columns representing mismatch signatures and the c matrix cells recording the counts of the signatures occurring in the samples.

kkdey/aRchaic documentation built on Aug. 17, 2018, 3:27 a.m.