archaic_pool: Aggregating signature counts from MFF files from one or more...
In kkdey/aRchaic: Exploration, Visualization and Clustering of DNA damage patterns
Description
Usage
Arguments
Value
Description
Aggregate signature counts data using archaic_prepare() from
multiple study directories into a single data frame or matrix.
Usage
1
archaic_pool(dat)
Arguments
dat
may be a list of count data matrices generated by archaic_prepare()
or a vector of folder names containing MFF files.
Value
The function creates a matrix of counts with combined samples from
multiple studies (stored as .csv MFF files and/or .RData file). The number of
rows of this matrix is same as the number of study samples across all the
studies considered, with columns representing mismatch signatures and the c
matrix cells recording the counts of the signatures occurring in the samples.
kkdey/aRchaic documentation built on Jan. 17, 2021, 5:33 p.m.
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Description Usage Arguments Value
Description
Aggregate signature counts data using archaic_prepare() from multiple study directories into a single data frame or matrix.
Usage
1 | archaic_pool(dat)
|
Arguments
dat |
may be a list of count data matrices generated by archaic_prepare() or a vector of folder names containing MFF files. |
Value
The function creates a matrix of counts with combined samples from multiple studies (stored as .csv MFF files and/or .RData file). The number of rows of this matrix is same as the number of study samples across all the studies considered, with columns representing mismatch signatures and the c matrix cells recording the counts of the signatures occurring in the samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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