Files in kkdey/aRchaic
Exploration, Visualization and Clustering of DNA damage patterns

.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/archaic_fit.R R/archaic_plot.R R/archaic_pool.R R/archaic_prepare.R R/archaic_view.R R/data.R R/decompose_theta.R R/filter_signatures_only_location.R README.md
aRchaic.Rproj
analysis/.nojekyll
analysis/README.md
analysis/_site.yml
analysis/chunks.R
analysis/include/footer.html
analysis/include/header.html
analysis/index.Rmd bin/README.md
bin/example.bam
bin/generate_summary_bams.py
code/README.md code/script.R
code/script.py
code/script.sh
data/base_probs_moderns.rda
docs/.nojekyll
docs/fig.png
docs/index.html
docs/index_files/figure-html/unnamed-chunk-9-1.png
docs/license.html
docs/logo_design.svg
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/site_libs/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/site_libs/bootstrap-3.3.5/css/bootstrap.css
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docs/site_libs/bootstrap-3.3.5/css/bootstrap.min.css
docs/site_libs/bootstrap-3.3.5/css/cerulean.min.css
docs/site_libs/bootstrap-3.3.5/css/cosmo.min.css
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docs/site_libs/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
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docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/site_libs/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/site_libs/bootstrap-3.3.5/js/bootstrap.js
docs/site_libs/bootstrap-3.3.5/js/bootstrap.min.js
docs/site_libs/bootstrap-3.3.5/js/npm.js
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docs/site_libs/jqueryui-1.11.4/README
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docs/site_libs/jqueryui-1.11.4/jquery-ui.css
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docs/site_libs/jqueryui-1.11.4/jquery-ui.min.css
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docs/site_libs/navigation-1.1/tabsets.js
docs/site_libs/tocify-1.9.1/jquery.tocify.css
docs/site_libs/tocify-1.9.1/jquery.tocify.js
docs/test.css
docs/vignette_fig.png
inst/.DS_Store
inst/CITATION
inst/extdata/.DS_Store
inst/extdata/ancients/.DS_Store
inst/extdata/ancients/.rda
inst/extdata/ancients/NE2_subsampled.csv
inst/extdata/ancients/NE3_subsampled.csv
inst/extdata/ancients/NE4_subsampled.csv
inst/extdata/ancients/NE5_subsampled.csv
inst/extdata/ancients/NE6_subsampled.csv
inst/extdata/archaic_results/.DS_Store
inst/extdata/moderns/.DS_Store
inst/extdata/moderns/.rda
inst/extdata/moderns/NA19788_subsampled.csv
inst/extdata/moderns/NA19789_subsampled.csv
inst/extdata/moderns/NA19792_subsampled.csv
inst/extdata/moderns/NA19794_subsampled.csv
inst/extdata/moderns/NA19795_subsampled.csv
man/.DS_Store
man/archaic_fit.Rd man/archaic_plot.Rd man/archaic_pool.Rd man/archaic_prepare.Rd man/archaic_view.Rd man/base_probs_moderns.Rd man/decompose_theta.Rd man/filter_signatures_only_location.Rd
vignettes/.DS_Store
vignettes/archaic.Rmd
vignettes/fig.001.png
vignettes/model.rda
vignettes/test.R
vignettes/vignette_fig.key
vignettes/vignette_fig.png
kkdey/aRchaic documentation built on Aug. 17, 2018, 3:27 a.m.