Files in kkdey/aRchaic

Exploration, Visualization and Clustering of DNA damage patterns

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/archaic_fit.R R/archaic_plot.R R/archaic_pool.R R/archaic_prepare.R R/archaic_view.R R/data.R R/decompose_theta.R R/filter_signatures_only_location.R README.md

aRchaic.Rproj

bin/README.md

bin/example.bam

bin/generate_summary_bams.py

data/base_probs_moderns.rda

docs/404.html

docs/LICENSE-text.html

docs/articles/archaic.html

docs/articles/archaic_files/figure-html/unnamed-chunk-10-1.png

docs/articles/archaic_files/figure-html/unnamed-chunk-8-1.png

docs/articles/fig.001.png

docs/articles/index.html

docs/articles/index_files/figure-html/unnamed-chunk-8-1.png

docs/articles/logo_design.svg

docs/articles/vignette_fig.png

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/archaic_fit.html

docs/reference/archaic_plot.html

docs/reference/archaic_pool.html

docs/reference/archaic_prepare.html

docs/reference/archaic_view.html

docs/reference/base_probs_moderns.html

docs/reference/decompose_theta.html

docs/reference/filter_signatures_only_location.html

docs/reference/index.html

inst/.DS_Store

inst/extdata/ancients/.rda

inst/extdata/ancients/NE2_subsampled.csv

inst/extdata/ancients/NE3_subsampled.csv

inst/extdata/ancients/NE4_subsampled.csv

inst/extdata/ancients/NE5_subsampled.csv

inst/extdata/ancients/NE6_subsampled.csv

inst/extdata/moderns/.rda

inst/extdata/moderns/NA19788_subsampled.csv

inst/extdata/moderns/NA19789_subsampled.csv

inst/extdata/moderns/NA19792_subsampled.csv

inst/extdata/moderns/NA19794_subsampled.csv

inst/extdata/moderns/NA19795_subsampled.csv

inst/images/vignette_fig.key

man/archaic_fit.Rd man/archaic_plot.Rd man/archaic_pool.Rd man/archaic_prepare.Rd man/archaic_view.Rd man/base_probs_moderns.Rd man/decompose_theta.Rd man/filter_signatures_only_location.Rd vignettes/archaic.Rmd

vignettes/fig.001.png

vignettes/logo_design.svg

vignettes/vignette_fig.png

kkdey/aRchaic documentation built on Jan. 17, 2021, 5:33 p.m.