How to make the csv file to input in R
(1) index the file with samtools
samtools index example.bam
(2) Run the python scipt with default options
`python generate_summary_bams.py -b example.bam -f /path/to/reference/FASTA/hs37d5\ .fa -o example_mff.csv
To view the possible options, please type
python --help generate_summary_bams.py
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