bin/README.md

In kkdey/aRchaic: Exploration, Visualization and Clustering of DNA damage patterns

How to make the csv file to input in R

(1) index the file with samtools

samtools index example.bam

(2) Run the python scipt with default options

`python generate_summary_bams.py -b example.bam -f /path/to/reference/FASTA/hs37d5\ .fa -o example_mff.csv

To view the possible options, please type

python --help generate_summary_bams.py

kkdey/aRchaic documentation built on Jan. 17, 2021, 5:33 p.m.