MouseDengESC: Mouse Embryonic stem cell (Esc) RNA-seq data due to Deng et...

Description Usage Format Value References Examples

Description

A dataset containing single cell RNA-seq data from mouse embryonic stem cells due to Deng et al (2014)

Usage

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Format

Data is an ExpressionSet object. The exprs slot contains the gene read counts in a gene by sample matrix with 22431 genes and 259 samples from different stages of mouse embryonic development (zygote, 2 cell, 4 cell, 8 cell, 16 cell, early blastocyst, mid blsastocyst and late blastocyst stages). phenoData slot contains meta information of the samples on the development stage the cell comes from and the id of the embryo it belongs to. featureData slot contains row information which are usually ensemebl gene ID or gene symbols.

Value

Returns an ExpressionSet object for the sequencing data

References

Qiaolin Deng, Daniel Ramsk<c3><b6>ld, Bj<c3><b6>rn Reinius, Rickard Sandberg. Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells. Science, Vol. 343, Issue 6167, pp. 193-196, DOI: 10.1126/science.1245316

Examples

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data(MouseDengESC)
Biobase::exprs(MouseDengESC)
Biobase::pData(MouseDengESC)
Biobase::featureData(MouseDengESC)

kkdey/singlecellRNAseqData documentation built on May 18, 2017, 8:44 p.m.