MouseDengESC: Mouse Embryonic stem cell (Esc) RNA-seq data due to Deng et...
In kkdey/singlecellRNAseqData: Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)
Description
Usage
Format
Value
References
Examples
Description
A dataset containing single cell RNA-seq data from mouse
embryonic stem cells due to Deng et al (2014)
Usage
1
Format
Data is an ExpressionSet object. The
exprs slot contains the gene read counts in a gene
by sample matrix with 22431 genes and 259 samples from different
stages of mouse embryonic development (zygote, 2 cell, 4 cell,
8 cell, 16 cell, early blastocyst, mid blsastocyst and late
blastocyst stages). phenoData slot contains meta information
of the samples on the development stage the cell comes from and the
id of the embryo it belongs to. featureData slot contains row
information which are usually ensemebl gene ID or gene symbols.
Value
Returns an ExpressionSet object for the sequencing data
References
Qiaolin Deng, Daniel Ramsköld, Björn Reinius, Rickard Sandberg.
Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression
in Mammalian Cells. Science, Vol. 343, Issue 6167, pp. 193-196,
DOI: 10.1126/science.1245316
Examples
1
2
3
4
data(MouseDengESC)
Biobase::exprs(MouseDengESC)
Biobase::pData(MouseDengESC)
Biobase::featureData(MouseDengESC)
kkdey/singlecellRNAseqData documentation built on May 20, 2019, 10:38 a.m.
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Description Usage Format Value References Examples
Description
A dataset containing single cell RNA-seq data from mouse embryonic stem cells due to Deng et al (2014)
Usage
1 |
Format
Data is an ExpressionSet object. The
exprs slot contains the gene read counts in a gene
by sample matrix with 22431 genes and 259 samples from different
stages of mouse embryonic development (zygote, 2 cell, 4 cell,
8 cell, 16 cell, early blastocyst, mid blsastocyst and late
blastocyst stages). phenoData slot contains meta information
of the samples on the development stage the cell comes from and the
id of the embryo it belongs to. featureData slot contains row
information which are usually ensemebl gene ID or gene symbols.
Value
Returns an ExpressionSet object for the sequencing data
References
Qiaolin Deng, Daniel Ramsköld, Björn Reinius, Rickard Sandberg. Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells. Science, Vol. 343, Issue 6167, pp. 193-196, DOI: 10.1126/science.1245316
Examples
1 2 3 4 | data(MouseDengESC)
Biobase::exprs(MouseDengESC)
Biobase::pData(MouseDengESC)
Biobase::featureData(MouseDengESC)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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