MouseZeiselBrain: Single cell RNA seq data from mouse cortex and hippocampus...

In kkdey/singlecellRNAseqData: Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)

Description

A dataset containing single cell RNA-seq data from mouse cortex and hippocampus due to Zeisel et al (2015)

Usage

MouseZeiselBrain

Format

Data is an ExpressionSet object. The exprs slot contains the gene read counts in a gene by sample matrix with 19968 genes and 3005 samples from different parts or cell types of mouse cortex and hippocampus. phenoData slot contains meta information of the samples pertaining to tissue level and cell type level information along with age, sex information of the subjects these cells have been collected from. featureData slot contains row information which are usually ensemebl gene ID or gene symbols.

Value

Returns an ExpressionSet object for the sequencing data

References

Amit Zeisel, Ana B Munoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Manguba, Liqun He, Christer Betsholtz, Charlott Rolny, Goncalo Castelo-Branco, Jens Hjerling-Leffler, & Sten Linarsson. Cell types in the mouse cortex and hippocampus revleaed by single-cell RNA-seq. Science 34: 6226, 1138-1142 (2015) DOI:10.1126/science.aaa1934

Examples

data(MouseZeiselBrain)
Biobase::exprs(MouseZeiselBrain)
Biobase::pData(MouseZeiselBrain)
Biobase::featureData(MouseZeiselBrain)

kkdey/singlecellRNAseqData documentation built on May 20, 2019, 10:38 a.m.