MouseJaitinSpleen: Mouse Spleen single cell RNA-seq data due to Jaitin et al...

In kkdey/singlecellRNAseqData: Selected Single Cell RNA-seq datasets - due to Deng et al (2014), Jaitin et al (2014) and Zeisel et al (2015)

Description

A dataset containing single cell RNA-seq data from mouse spleen due to Jaitin et al (2014)

Usage

MouseJaitinSpleen

Format

Data is an ExpressionSet object. The exprs slot contains the gene read counts in a gene by sample matrix with 20190 genes and 4590 samples. phenoData slot contains meta information of the samples on 15 features including batches, sorting markers, ERCC information etc.featureData slot contains row information which are usually ensemebl gene ID or gene symbols.

Value

Returns an ExpressionSet object for the sequencing data

References

Diego Adhemar Jaitin, Ephraim Kenigsberg, Hadas Keren-Shaul, Naama Elefant, Franziska Paul, Irina Zaretsky, Alexander Mildner, Nadav Cohen, Steffen Jung, Amos Tanay, Ido Amit. Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types. Science 343, 776-779 (2014) DOI: 10.1126/science.1247651

Examples

data(MouseJaitinSpleen)
Biobase::exprs(MouseJaitinSpleen)
Biobase::pData(MouseJaitinSpleen)
Biobase::featureData(MouseJaitinSpleen)

kkdey/singlecellRNAseqData documentation built on May 20, 2019, 10:38 a.m.