inst/shiny/markdown/prune_header.md
In kkmann/pwcuratr: Functional Pathway Cluster Curation tool
Prune pathway cluster
To increase the specificiy of the elicited pathway clusters,
the candidate genes derived via shared reactome pathways with any of the
seed genes can be pruned.
The pruing is done on the graph defines by all candidate genes and the
set of interacitons by Wu et al. filtered by a minimal confidence score.
Only candidate genes that are
$k$
or fewer edges (interactions) away from one of
the seed genes are retained.
Black labels correspond to seed genes, connected components are color-coded.
kkmann/pwcuratr documentation built on March 7, 2020, 2 a.m.
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Prune pathway cluster
To increase the specificiy of the elicited pathway clusters, the candidate genes derived via shared reactome pathways with any of the seed genes can be pruned. The pruing is done on the graph defines by all candidate genes and the set of interacitons by Wu et al. filtered by a minimal confidence score. Only candidate genes that are $k$ or fewer edges (interactions) away from one of the seed genes are retained. Black labels correspond to seed genes, connected components are color-coded.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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