Man pages for klarakaleb/roma
R wrapper for the OMA REST API

bulkRetrieveBulk retrieve information for a list of proteins
cash-.omadb_objResolve URLs automatically when accessed
formatTopGOFormat the GO annotations data
getAnnotationGet GO annotation for a sequence Function
getAttributeGet the value for the Object Attribute
getDataGet the Data Function
getGenomeAlignmentGet Whole Genome Alignment Function
getHOGGet the HOG Data Function
getInfoGet further information for a dataframe of members
getObjectAttributesGet the Object Attributes
getTaxonomyGet the Taxonomic tree function
getTopGOGet the topGO Object function
getTreeGet the Tree Object
getXrefGet the CrossReferences in the OMA database for a pattern
groupAn example OMA group object.
hogAn example HOG object.
mapSequenceMap the Protein Sequence Function
OmaDB-packageOmaDB: A package for the orthology prediction data download...
orthologsAn example orthologs object.
pairsAn example genome alignment object.
proteinAn example protein object.
resolveURLGet the Further Information behind the URL Function
sequence_annotationAn example dataframe containing GO annotations identified...
sequence_mapAn example dataframe containing proteins identified from a...
taxonomyAn example newick format taxonomy object.
xrefAn example xref object.
klarakaleb/roma documentation built on Oct. 14, 2018, 1:12 a.m.