OmaDB is a wrapper for the REST API for the Orthologous MAtrix project (OMA) which is a database for the inference of orthologs among complete genomes. For more details on the OMA project, see https://omabrowser.org/.
The package contains a range of functions that are used to query the database. Some of the main functions are listed below:
In addition to these, OmaDB features a range of functions that are used to format the retrieved data into some commonly used Bioconductor objects using packages such as GenomicRanges, Biostrings, topGO and ggtree. Some of them are listed below:
The above functions are described in more detail in the package vignette's listed below:
Get started with OmaDB
Exploring Hierarchical orthologous groups with OmaDB
Exploring Taxonomic trees with OmaDB
Sequence Analysis with OmaDB
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