formatTopGO: Format the GO annotations data

Description Usage Arguments Value Examples

View source: R/formatTopGO.R

Description

The function to create a list of GO annotations that is compatible with topGO from protein objects in roma

Usage

1
formatTopGO(geneList, format)

Arguments

geneList

the list of OmaDB protein objects or a dataframe of ontologies to be included in the analysis - this is where the GO annotations are extracted from.

format

format for the data to be returned in - either 'GO2geneID' or 'geneID2GO'

Value

a list containing the GO2geneID or geneID2GO information

Examples

1
2
geneList = list(getProtein(id='YEAST01'),getProtein(id='YEAST03'))
annotations = formatTopGO(geneList,format='geneID2GO')

klarakaleb/roma documentation built on Nov. 11, 2020, 5:36 a.m.