getAllCelltypes: Returns cell types per species and filter criteria

In klprint/markerDB: Give access to MarkerDB (http://markers.blebli.de)

Description

This is a more flexible function, but basically resembles the usability of getAllCelltypesInTissue without the tissue argument. Using the filter_list argument with a "tissue" name can reproduce the getAllCelltypesInTissue function.

Usage

getAllCelltypes(species, filter_list = list(),
  server = "http://markers.blebli.de")

Arguments

species	Name of species
filter_list	Additional filters in list format (i.e: list(stage = "p7")). Wildcards can be added by using a "%" sign. So, if all embryonic mouse markers are wanted, list like list(stage="E%") can be used
server	URL of the server hosting the markerDB website.

Details

CAUTION this function returns cell types where positive AND negative markers are known.

klprint/markerDB documentation built on May 16, 2019, 4:09 a.m.