getAllCelltypesInTissue: Finds all cell types annotated per tissue and species
In klprint/markerDB: Give access to MarkerDB (http://markers.blebli.de)
Description
Usage
Arguments
Value
Description
A easy function which lets the user filter MarkerDB for a tissue and species and returns a list of cell types annotated.
Usage
1
2
getAllCelltypesInTissue(tissue, species, filter_list = list(),
server = "http://markers.blebli.de")
Arguments
tissue
name of tissue
species
name of species
filter_list
Additional filters in list format (i.e: list(stage = "p7")). Wildcards can be added by using a "%" sign. So, if all embryonic mouse markers are wanted, list like list(stage="E%") can be used.
server
URL of the server hosting the markerDB website.
Value
Character vector of cell types
klprint/markerDB documentation built on May 16, 2019, 4:09 a.m.
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Description Usage Arguments Value
Description
A easy function which lets the user filter MarkerDB for a tissue and species and returns a list of cell types annotated.
Usage
1 2 | getAllCelltypesInTissue(tissue, species, filter_list = list(),
server = "http://markers.blebli.de")
|
Arguments
tissue |
name of tissue |
species |
name of species |
filter_list |
Additional filters in list format (i.e: list(stage = "p7")). Wildcards can be added by using a "%" sign. So, if all embryonic mouse markers are wanted, list like list(stage="E%") can be used. |
server |
URL of the server hosting the markerDB website. |
Value
Character vector of cell types
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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