Files in knausb/vcfR
Manipulate and Visualize VCF Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/AllClass.R R/INFO2df.R R/RcppExports.R R/addID.R R/check_keys.R R/chromR-method.R R/chromR_example.R R/chromR_functions.R R/chromR_to_vcfR.R R/chromo_plot.R R/create_chromR.R R/drplot.R R/extract_gt.R R/fasta_output.R R/freq_peak_plot.R R/genetic_diff.R R/genotype_matrix_functions.R R/get_methods.R R/gt_to_popsum.R R/heatmap_bp.R R/io_vcfR.R R/is_het.R R/maf.R R/onUnload.R R/ordisample.R R/pairwise_genetic_diff.R R/peak_to_ploid.R R/pipe.R R/proc_chromR.R R/queryMETA.R R/query_gt.R R/ranking.R R/rePOS.R R/sandbox.R R/summary_tables.R R/vcfR-method.R R/vcfR.R R/vcfR2DNAbin.R R/vcfR2migrate.R R/vcfR_conversion.R R/vcfR_example.R R/vcfR_test.R R/vcfR_to_tidy_functions.R R/vep.R R/windowing.R R/zzz.R README.md
appveyor.yml
cleanup
cran-comments.md
data/chromR_example.RData
data/vcfR_example.rdata
data/vcfR_test.RData
data/vep.RData
inst/CITATION
man/AD_frequency.Rd man/INFO2df.Rd man/addID.Rd man/check_keys.Rd man/chromR-class.Rd man/chromR-method.Rd man/chromR_example.Rd man/chromR_functions.Rd man/chrom_to_vcfR.Rd man/chromo_plot.Rd man/create_chromR.Rd man/drplot.Rd man/extract_gt.Rd man/fasta_output.Rd man/freq_peak.Rd man/freq_peak_plot.Rd man/genetic_diff.Rd man/genotype_matrix.Rd man/getFIX.Rd man/heatmap_bp.Rd man/io_vcfR.Rd man/is_het.Rd man/maf.Rd man/masplit.Rd man/ordisample.Rd man/pairwise_genetic_diff.Rd man/peak_to_ploid.Rd man/pipe.Rd man/pop_gen_sum.Rd man/proc_chromR.Rd man/queryMETA.Rd man/query_gt.Rd man/ranking.Rd man/rePOS.Rd man/summary_tables.Rd man/vcfR-class.Rd man/vcfR-method.Rd man/vcfR.Rd man/vcfR2DNAbin.Rd man/vcfR2migrate.Rd man/vcfR_conversion.Rd man/vcfR_example.Rd man/vcfR_test.Rd man/vcfR_to_tidy_conversion.Rd man/vep.Rd man/windowing.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/NM2winNM.cpp
src/RcppExports.cpp
src/ad_frequency.cpp
src/deprecated_funcs.cpp
src/extract_gt.cpp
src/freq_peak.cpp
src/gt_to_popsum.cpp
src/is_het.cpp
src/masplit.cpp
src/pair_sort.cpp
src/rank_variants.cpp
src/read_vcfR.cpp
src/seq_to_rects.cpp
src/var_window.cpp
src/vcfRCommon.cpp
src/vcfRCommon.h
src/write_vcfR.cpp
tests/testthat.R tests/testthat/test_010_vcfR.R tests/testthat/test_011_vcfR_methods.R tests/testthat/test_012_write_vcfR_cpp.R tests/testthat/test_013_read_vcfR_cpp.R tests/testthat/test_014_read_vcfR.R tests/testthat/test_015_write_vcfR.R tests/testthat/test_020_chromR.R tests/testthat/test_INFO2df.R tests/testthat/test_ad_frequency.R tests/testthat/test_addID.R tests/testthat/test_chromR_method.R tests/testthat/test_chromo_plot.R tests/testthat/test_conversion.R tests/testthat/test_drplot.R tests/testthat/test_extract_gt.R tests/testthat/test_freq_peak.R tests/testthat/test_genetic_diff.R tests/testthat/test_genotype_matrix_functions.R tests/testthat/test_get.R tests/testthat/test_heatmapbp.R tests/testthat/test_is_het.R tests/testthat/test_maf.R tests/testthat/test_peak_to_ploid.R tests/testthat/test_proc_chromR.R tests/testthat/test_queryMETA.R tests/testthat/test_query_gt.R tests/testthat/test_rank_variants.R tests/testthat/test_rePOS.R tests/testthat/test_summary_tables.R tests/testthat/test_var_window.R tests/testthat/test_vcfR2DNAbin.R tests/testthat/test_vcfR2migrate.R tests/testthat/test_vcfRtidy.R
tools/hexagon_template.svg
tools/pinfsc50.png
tools/vcfR_hexagon.svg
tools/vcfR_hexagon_v2.svg
tools/vcfR_hexagon_v3.svg
tools/vcfR_hexagon_v4.svg
vcfR.Rproj
vignettes/converting_data.Rmd
vignettes/converting_data.html
vignettes/intro_to_vcfR.Rmd
vignettes/vcfR_flowchart.dia
vignettes/vcfR_flowchart.png
vignettes/vcf_data.Rmd vignettes/workflow.Rmd
knausb/vcfR documentation built on July 13, 2018, 2:23 p.m.