get_marker_settings_table: Generate marker settings table from a pedigree

In knifecake/forrelshiny: A graphical user interface for the exclusion power function from the package forrel

Description

Generate marker settings table from a pedigree

Usage

get_marker_settings_table(
  x,
  included_markers,
  mutation_settings,
  allele_counts,
  simulation_threshold
)

Arguments

x	a ped object or a list of such. If given a list it only considers marker data in the first component.
included_markers	a list of markers which will be included in the calculation
mutation_settings	a list of mutation models corresponding to each marker
allele_counts	a list of the number of alleles that each marker may take
simulation_threshold	the number of alleles after which calculations are simulated

Value

a data.frame with the columns Marker, Mutations, Sex-linked? and Include in calculation? derived from the marker metadata in the pedigree

knifecake/forrelshiny documentation built on March 15, 2020, 12:36 p.m.