README.md

In korsunskylab/rcna: Covarying Neighborhood Analysis

This package provides a native R implementation of the cna python package by Reshef and Rumker.

To get started, install rcna

library(devtools)
install_github('korsunskylab/rcna')

And follow either

1) The basic usage vignette at https://github.com/korsunskylab/rcna/blob/main/docs/demo_R.ipynb 2) The Seurat vignette at https://github.com/korsunskylab/rcna/blob/main/docs/demo_Seurat.ipynb

Next, - Read the paper at https://www.biorxiv.org/content/10.1101/2021.04.19.440534v1.full - Read the python code at https://github.com/immunogenomics/cna

korsunskylab/rcna documentation built on Aug. 27, 2023, 4:40 a.m.