nam: Build and decompose neighborhood abundance matrix

In korsunskylab/rcna: Covarying Neighborhood Analysis

Build and decompose neighborhood abundance matrix

Description

Build and decompose neighborhood abundance matrix

Usage

nam(
  data,
  batches = NULL,
  covs = NULL,
  filter_samples = NULL,
  nsteps = NULL,
  max_frac_pcs = 0.15,
  suffix = "",
  force_recompute = FALSE,
  verbose = FALSE
)

Arguments

data	list containing samplem (sample-level metadata), obs (cell-level metadata), and connectivities (dgCMatrix)
batches	string(s) to denote batch variables.
covs	string(s) to denote covariate variables.
filter_samples	TBD
nsteps	TBD
max_frac_pcs	TBD
suffix	TBD
force_recompute	TBD
verbose	TBD

Value

TBD

korsunskylab/rcna documentation built on Aug. 27, 2023, 4:40 a.m.