API for kpj/dce
Pathway Enrichment Based on Differential Causal Effects
| Global functions | |
|---|---|
| .dce | Source code |
| Gsolve | Source code |
| as.data.frame.dce | Man page Source code |
| as_adjmat | Man page Source code |
| create_graph_from_dataframe | Source code |
| create_random_DAG | Man page Source code |
| dce | Man page |
| dce,graphNEL-method | Man page |
| dce,igraph-method | Man page |
| dce,matrix-method | Man page |
| dce_nb | Man page Source code |
| df_pathway_statistics | Man page |
| estimateTheta | Source code |
| estimate_latent_count | Man page Source code |
| g2dag | Man page Source code |
| get_adjustment_set | Source code |
| get_pathway_info | Man page Source code |
| get_pathways | Man page Source code |
| get_prediction_counts | Man page Source code |
| glm.dce.fit | Source code |
| glm.dce.nb.fit | Source code |
| glm.mle | Source code |
| glm.mle.new | Source code |
| glm.nb.rob | Source code |
| glm_solver | Source code |
| graph2df | Man page Source code |
| graph_union | Man page Source code |
| graph_union_two | Source code |
| loglikeli.func | Source code |
| make.log.link | Source code |
| negative.binomial.special | Source code |
| pcor | Man page Source code |
| permutation_test | Man page Source code |
| plot.dce | Man page |
| plot_network | Man page Source code |
| propagate_gene_edges | Man page Source code |
| resample_edge_weights | Man page Source code |
| rlm_dce | Man page Source code |
| simulate_data | Man page |
| simulate_data,graphNEL-method | Man page |
| simulate_data,igraph-method | Man page |
| simulate_data,matrix-method | Man page |
| summary.glm.mle | Source code |
| summary.rlm_dce | Man page Source code |
| theta.ml.rob | Source code |
| topologically_ordering | Man page Source code |
| trueEffects | Man page Source code |
