get_annotation: Helper to get annotation list from a physeq object
In krisrs1128/phyloseqExtend: Extend Phyloseq to Rich Data Types
Description
Usage
Arguments
Value
Description
Helper to get annotation list from a physeq object
Usage
1
get_annotation(physeq, annotation_names = NULL)
Arguments
physeq
A phyloseq object with a nonempty sample data slot
annotation_names
A character vector giving the names of sample data
columns to extract
Value
annotation_interaction A list containing the following elements
$annotation: The columns of the sample_data data.frame requested from
annotation_names
$interaction_label: The factor vector containing all combinations of
levels in the annotation variables.
krisrs1128/phyloseqExtend documentation built on May 20, 2019, 1:31 p.m.
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Description Usage Arguments Value
Description
Helper to get annotation list from a physeq object
Usage
1 | get_annotation(physeq, annotation_names = NULL)
|
Arguments
physeq |
A phyloseq object with a nonempty sample data slot |
annotation_names |
A character vector giving the names of sample data columns to extract |
Value
annotation_interaction A list containing the following elements $annotation: The columns of the sample_data data.frame requested from annotation_names $interaction_label: The factor vector containing all combinations of levels in the annotation variables.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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