merge_ctable_opts: Merge default contingency table processing options
In krisrs1128/phyloseqExtend: Extend Phyloseq to Rich Data Types
Description
Usage
Arguments
Value
Description
Merge default contingency table processing options
Usage
1
merge_ctable_opts(opts = list())
Arguments
opts
A partially filled list specifying options to contingency table
processing. Those that are not specified will be merged according to their
defaults below. These are,
$id_col: Is the first column of the data a nonnumeric identifier column?
Defaults to TRUE.
$filter_ix: A function that can be applied to the full matrix (excluding a
potential id column), and which returns the indices of the row filtered
version. Defaults to filter_nonzero().
$transform: A function that can be applied to the full matrix, transforming
its values. Defaults to log().
Value
A modified version of opts, with defaults filled in.
krisrs1128/phyloseqExtend documentation built on May 20, 2019, 1:31 p.m.
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Description Usage Arguments Value
Description
Merge default contingency table processing options
Usage
1 | merge_ctable_opts(opts = list())
|
Arguments
opts |
A partially filled list specifying options to contingency table processing. Those that are not specified will be merged according to their defaults below. These are, $id_col: Is the first column of the data a nonnumeric identifier column? Defaults to TRUE. $filter_ix: A function that can be applied to the full matrix (excluding a potential id column), and which returns the indices of the row filtered version. Defaults to filter_nonzero(). $transform: A function that can be applied to the full matrix, transforming its values. Defaults to log(). |
Value
A modified version of opts, with defaults filled in.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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