phyloseqExtend: Assemble several data objects into a phyloseqExtend object.

In krisrs1128/phyloseqExtend: Extend Phyloseq to Rich Data Types

Description

This creates a phyloseqExtend object from the multiple sources of data common in microbiome experiments.

Usage

phyloseqExtend(otu_table_object = NULL, sample_data_object = NULL,
  phy_tree_object = NULL, refseq_object = NULL, spectra_object = NULL)

Arguments

otu_table_object	An object of class otu_table, to incorporate into the phyloseqExtend object. Defaults to NULL.
sample_data_object	An object of class sam_data, to incorporate into the phyloseqExtend object. Defaults to NULL.
phy_tree_object	An object of class phylo, to incorporate into the phyloseqExtend object. Defaults to NULL.
refseq_object	An object of class refseq, to incorporate into the phyloseqExtend object. Defaults to NULL.
spectra_object	An object of class spectra, to incorporate into the phyloseqExtend object. Defaults to NULL.

Value

phyloseqExtend_object An object of class phyloseqExtend, with slots containing each of the input data objects, and NULL for potential but unoccupied slots.

krisrs1128/phyloseqExtend documentation built on May 20, 2019, 1:31 p.m.