storeTsne: storeTsne

In kritikakarri/bigSCale: A framework for the analysis of single cell data (RNA-seq and ATAC-seq) including clustering,phenotyping,pseudotime and inferring gene regulatory networks.

Description

Calculates and stores the TSNE of your dataset. It uses the package Rtsne

Usage

storeTsne(object, ...)

Arguments

...	passed to Rtsne()
sce	object of the SingleCellExperiment class.

Value

object of the SingleCellExperiment class with TSNE stored inside

Examples

sce=storeTsne(sce)

kritikakarri/bigSCale documentation built on Dec. 21, 2021, 7:47 a.m.