rename.NA.taxa: rename NA taxonomic levels
In kstagaman/phyloseqCompanion: Provides additional functions to work with phyloseq objects
View source: R/rename_NA_taxa.R
rename.NA.taxa R Documentation
rename NA taxonomic levels
Description
Rename taxonomic levels so that NAs don't all get lumped together (i.e. uses higher-level assignments in lower-level names to preserve lineages).
Usage
rename.NA.taxa(ps)
Arguments
ps
a phyloseq object
See Also
tax_table, phyloseq
Examples
data(example_phyloseq)
new.ps <- rename.NA.taxa(example_phyloseq)
head(tax_table(new.ps))
kstagaman/phyloseqCompanion documentation built on Aug. 26, 2022, 5:07 a.m.
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View source: R/rename_NA_taxa.R
| rename.NA.taxa | R Documentation |
rename NA taxonomic levels
Description
Rename taxonomic levels so that NAs don't all get lumped together (i.e. uses higher-level assignments in lower-level names to preserve lineages).
Usage
rename.NA.taxa(ps)
Arguments
ps |
a phyloseq object |
See Also
tax_table, phyloseq
Examples
data(example_phyloseq) new.ps <- rename.NA.taxa(example_phyloseq) head(tax_table(new.ps))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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