Man pages for kstagaman/sharpton-lab-metaGTx.processing
Sharpton Lab Metagenomic & Metatranscriptomic Processing
| create.processing.env | Create processing environment |
| execute.commands | Execute commands |
| extract.metaphlan2.files | Extract metaphlan2 results |
| generate.full.commands | Generate full commands |
| generate.SGE.command | Generate SGE command |
| generate.template | Generate Pipeline Template |
| generate.tool.command | Generate tool command |
| get.pct.unalign | Get percent unaligned |
| helper.functions | Helper functions |
| install.chocophlan | Install Chocophlan Database |
| join.metaphlan2.tables | Join single-sample metaphlan2 tables |
| join.unpacked.pathways.tables | Join single-sample unpacked pathways tables |
| symlink.files | Create symlinks to files |
| symlink.raw.fastqs | Create symlinks to fastq(.gz) files |
| template.code | Template Code |
