extract.metaphlan2.files: Extract metaphlan2 results

In kstagaman/sharpton-lab-metaGTx.processing: Sharpton Lab Metagenomic & Metatranscriptomic Processing

Extract metaphlan2 results

Description

This function extracts the humann metaphlan2 bug list file from a tgz file

Usage

extract.metaphlan2.files(
  match.pattern = "tgz$",
  location,
  move.to,
  n.cores = 1
)

Arguments

match.pattern	character; pattern to match desired files and directories. Default is "tgz$"
location	character; path to directory with files/directories you want to manipulate.
move.to	character; path to which to move extracted file.
n.cores	integer; if 1, will run serially, otherwise will extract in parallel utilzing up to the number of cores specified. Default is 1.

kstagaman/sharpton-lab-metaGTx.processing documentation built on Oct. 2, 2022, 4:39 p.m.