join.unpacked.pathways.tables: Join single-sample unpacked pathways tables

In kstagaman/sharpton-lab-metaGTx.processing: Sharpton Lab Metagenomic & Metatranscriptomic Processing

Join single-sample unpacked pathways tables

Description

This function takes multiple humann unpacked pathwaysfiles and combines them into a single output file.

Usage

join.unpacked.pathways.tables(
  match.pattern = "unpacked_pathways_relab",
  input.dir,
  output.file
)

Arguments

match.pattern	character; pattern to match desired files and directories. Default is "metaphlan_bugs_list"
input.dir	character; path to input directory.
output.file	character; path and name of output file.

kstagaman/sharpton-lab-metaGTx.processing documentation built on Oct. 2, 2022, 4:39 p.m.