join.metaphlan2.tables: Join single-sample metaphlan2 tables
In kstagaman/sharpton-lab-metaGTx.processing: Sharpton Lab Metagenomic & Metatranscriptomic Processing
View source: R/join_metaphlan2_tables.R
join.metaphlan2.tables R Documentation
Join single-sample metaphlan2 tables
Description
This function takes multiple humann metaphlan2 bug list files and combines them into a single output file.
Usage
join.metaphlan2.tables(
match.pattern = "metaphlan_bugs_list",
input.dir,
output.file
)
Arguments
match.pattern
character; pattern to match desired files and directories. Default is "metaphlan_bugs_list"
input.dir
character; path to input directory.
output.file
character; path and name of output file.
kstagaman/sharpton-lab-metaGTx.processing documentation built on Oct. 2, 2022, 4:39 p.m.
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View source: R/join_metaphlan2_tables.R
| join.metaphlan2.tables | R Documentation |
Join single-sample metaphlan2 tables
Description
This function takes multiple humann metaphlan2 bug list files and combines them into a single output file.
Usage
join.metaphlan2.tables( match.pattern = "metaphlan_bugs_list", input.dir, output.file )
Arguments
match.pattern |
character; pattern to match desired files and directories. Default is "metaphlan_bugs_list" |
input.dir |
character; path to input directory. |
output.file |
character; path and name of output file. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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