ks.best_signiture_proposals: ks.best_signiture_proposals
In kstawiski/miRNAselector: miRNAselector - a package for biomarker selection based on high-throughput experiments.
Description
Usage
Arguments
Value
View source: R/ks.best_signiture_proposals.R
Description
Propose the best signture based on benchamrk methods.
This function calculated the 'metaIndex1' value which is the mean accuracy from train, test and validation dataset.
In the next step, it sorts the miRNA sets based on 'metaIndex1' score. The first row in resulting data frame is the winner miRNA set.
Usage
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4
ks.best_signiture_proposals(
benchmark_csv = "benchmark1578929876.21765.csv",
without_train = F
)
Arguments
benchmark_csv
Path to benchmark csv.
without_train
One can argue, that accuracy on training dataset should not be used in calculation of metaIndex. By setting this to TRUE, you can calculate it without train dataset.
Value
The benchmark sorted by metaIndex. First row is the best performing miRNA set.
kstawiski/miRNAselector documentation built on Oct. 10, 2020, 9:03 a.m.
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Description Usage Arguments Value
View source: R/ks.best_signiture_proposals.R
Description
Propose the best signture based on benchamrk methods. This function calculated the 'metaIndex1' value which is the mean accuracy from train, test and validation dataset. In the next step, it sorts the miRNA sets based on 'metaIndex1' score. The first row in resulting data frame is the winner miRNA set.
Usage
1 2 3 4 | ks.best_signiture_proposals(
benchmark_csv = "benchmark1578929876.21765.csv",
without_train = F
)
|
Arguments
benchmark_csv |
Path to benchmark csv. |
without_train |
One can argue, that accuracy on training dataset should not be used in calculation of metaIndex. By setting this to TRUE, you can calculate it without train dataset. |
Value
The benchmark sorted by metaIndex. First row is the best performing miRNA set.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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