plotGeneDendrogram: Visualize clustering results

In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis

Visualize clustering results

Description

Plots a dendrogram of the distance matrix calculated via runSpatialCorrelation().

Usage

plotGeneDendrogram(object, method_hclust = "complete", of_sample = NA, ...)

Arguments

object	A valid spata-object.
method_hclust	Character value. Denotes the hierarchical clustering method according to which the clustering is performed. Valid input options are 'ward.D', 'ward.D2', 'single', 'complete', 'average', 'mcquitty', 'median' and 'centroid'.
of_sample	This argument is currently inactive. It might be reactivated when spata-objects can store more than one sample.
...	Additional arguments given to ggdendro::ggdendrogram()

Value

ggplot_family return

kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.