filter_pident: filter_pident

In kullrich/CRBHits: Conditional reciprocal best hits (CRBHits) in R

filter_pident

Description

This function filters BLAST-like tabular output according to protein identity.

Usage

filter_pident(rbh, pident = 0, inverse = FALSE)

Arguments

rbh	BLAST-like tabular matrix [mandatory]
pident	percent identity [default: 0.0]
inverse	specify if filter should keep the removed values [default: FALSE]

Value

rbh matrix

Author(s)

Kristian K Ullrich

Examples

## load crbh data
data(ath_aly_crbh)
dim(ath_aly_crbh$crbh1)
dim(filter_pident(
    rbh=ath_aly_crbh$crbh1,
    pident=75))

kullrich/CRBHits documentation built on March 29, 2024, 11:34 a.m.