filter_rost1999: filter_rost1999
In kullrich/CRBHits: Conditional reciprocal best hits (CRBHits) in R
View source: R/filter_rost1999.R
filter_rost1999 R Documentation
filter_rost1999
Description
This function filters BLAST-like tabular output according to
equation 2 of Rost 1999.
Usage
filter_rost1999(rbh, inverse = FALSE)
Arguments
rbh
BLAST-like tabular matrix [mandatory]
inverse
specify if filter should keep the removed values
[default: FALSE]
Value
rbh matrix
Author(s)
Kristian K Ullrich
References
Rost B. (1999). Twilight zone of protein sequence alignments.
Protein Engineering, 12(2), 85-94.
Examples
## load crbh data
data(ath_aly_crbh)
dim(ath_aly_crbh$crbh1)
dim(filter_rost1999(
rbh=ath_aly_crbh$crbh1))
kullrich/CRBHits documentation built on Nov. 13, 2024, 7:44 a.m.
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View source: R/filter_rost1999.R
| filter_rost1999 | R Documentation |
filter_rost1999
Description
This function filters BLAST-like tabular output according to equation 2 of Rost 1999.
Usage
filter_rost1999(rbh, inverse = FALSE)
Arguments
rbh |
BLAST-like tabular matrix [mandatory] |
inverse |
specify if filter should keep the removed values [default: FALSE] |
Value
rbh matrix
Author(s)
Kristian K Ullrich
References
Rost B. (1999). Twilight zone of protein sequence alignments. Protein Engineering, 12(2), 85-94.
Examples
## load crbh data
data(ath_aly_crbh)
dim(ath_aly_crbh$crbh1)
dim(filter_rost1999(
rbh=ath_aly_crbh$crbh1))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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