filter_rost1999: filter_rost1999

In kullrich/CRBHits: Conditional reciprocal best hits (CRBHits) in R

filter_rost1999

Description

This function filters BLAST-like tabular output according to equation 2 of Rost 1999.

Usage

filter_rost1999(rbh, inverse = FALSE)

Arguments

rbh	BLAST-like tabular matrix [mandatory]
inverse	specify if filter should keep the removed values [default: FALSE]

Value

rbh matrix

Author(s)

Kristian K Ullrich

References

Rost B. (1999). Twilight zone of protein sequence alignments. Protein Engineering, 12(2), 85-94.

Examples

## load crbh data
data(ath_aly_crbh)
dim(ath_aly_crbh$crbh1)
dim(filter_rost1999(
    rbh=ath_aly_crbh$crbh1))

kullrich/CRBHits documentation built on March 29, 2024, 11:34 a.m.