filter_tcov: filter_tcov

In kullrich/CRBHits: Conditional reciprocal best hits (CRBHits) in R

filter_tcov

Description

This function filters BLAST-like tabular output according to percentage target coverage.

Usage

filter_tcov(rbh, tcov = 0, inverse = FALSE)

Arguments

rbh	BLAST-like tabular matrix [mandatory]
tcov	target coverage [default: 0.0]
inverse	specify if filter should keep the removed values [default: FALSE]

Value

rbh matrix

Author(s)

Kristian K Ullrich

Examples

## load crbh data
data(ath_aly_crbh)
dim(ath_aly_crbh$crbh1)
dim(filter_tcov(
    rbh=ath_aly_crbh$crbh1,
    tcov=0.75))

kullrich/CRBHits documentation built on Nov. 13, 2024, 7:44 a.m.