find_rts_region: Finds Region Specific Reproductive Numbers

In kyamkovoy/RepNumEst: Estimate the Effective Reproductive Number

Description

Using data and specified serial interval, finds the effective reproductive for each region while allowing for interaction between regions. The default serial interval uses an estimate for the United States on the weekly time scale.

Usage

find_rts_region(data, reg_mat, si_shape = 1.47, si_rate = 0.04529,
  k = 100)

Arguments

data	Dataframe to be used for estimating reproductive numbers. Must contain 'cases' column and numerical 'region' column.
reg_mat	Matrix (4 x 4) representing interactions between regions.
si_shape	Shape parameter for serial interval.
si_rate	Rate parameter for serial interval.
k	Maximum length of serial interval.

Value

List of effective reproductive numbers for each regions and corresponding week numbers.

kyamkovoy/RepNumEst documentation built on May 27, 2019, 2:07 p.m.